Hi Folks, I have a related issue. My problem could be easy to solve if I could maintain original resolution from AFNI to Freesurfer and then back to AFNI. For instance, I would like to force no reslicing/interpolation with mri_convert. My original resolution is .938 x .938 x 1. I thought that there was a way to do this with mri_convert, but I can't seem to get it to work. There are ways to get the aseg to align with the original anat if it's moved back to AFNI, but no change in resolution would make it easier.
Brian
From: Shahabuddin Ansari ansari_shahab@yahoo.com Date: Sat, 25 Mar 2006 16:07:24 -0800 (PST) To: fischl@nmr.mgh.harvard.edu Cc: "freesurfer@nmr.mgh.harvard.edu" freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Transformation of segmenation
Hello Bruce,
Let me rephrase my question. When I pass a brain MRI to freesurfer, it transforms the image spatially before it does the segmentation. Now the segmented objects have different orientation from the original MRI. My question is how can I transform the segmentation back to original MRI?
Thanks Shahab
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