I've also attached a new mri_sclimbic_seg. You can copy it to $FREESURFER/python/scripts/mri_sclimbic_seg
On 9/23/2022 10:52 AM, Kumar, Avnish wrote:
Hi Markus,
This bug has beenfixed https://github.com/freesurfer/freesurfer/commit/ca8ad3faab3a0a2f5e64b22c81232421fe2e53f2in the dev branch of Freesurfer (FS). You can get the changes in your local copy of FS by either/git checkout/the /mri_sclimbic_seg/mri_sclimbic_seg /file into the appropriate subfolder (<FS_install_dir>//python/scripts/mri_sclimbic_seg/) where you installed FS or you could simply edit the /mri_sclimbic_seg/ file at that location as in thebug fix https://github.com/freesurfer/freesurfer/commit/ca8ad3faab3a0a2f5e64b22c81232421fe2e53f2.
Best, Avnish
*From:* freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Markus Handal Sneve m.h.sneve@psykologi.uio.no *Sent:* Wednesday, September 21, 2022 5:17 PM *To:* Freesurfer@nmr.mgh.harvard.edu Freesurfer@nmr.mgh.harvard.edu *Subject:* [Freesurfer] mri_sclimbic_seg: --conform not conforming?
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Hi,
I’m testing mri_sclimbic_seg in the new FS version (7.3.2). My structurals are 0.8mm isotropic, so I’m adding the —conform flag, but still get this error:
Any ideas? And, BTW, I had to set the environmental variable HDF_USE_FILE_LOCKING to FALSE to get the tool running. Perhaps a tip to add to the wiki, if not people can now see it here.
Thanks for your great work! Cheers, Markus
Markus Handal Sneve, Ph.D. Center for Lifespan Changes in Brain and Cognition Department of Psychology University of Oslo
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
