Thanks, Doug for the binary.
A quick follow-up: what does the sign in either mri_glmfit-sim/mri_fdr indicate? When I open F.mgh, the values are only positive and p-values obtained from them has sign of +/-. My understanding is + indicates where mean_A>mean_B and vice versa.
If for example, I am interested in mean_A>mean_B then should I pass --pos (mri_fdr) or --cache 2.30101 pos (mri_glmfit-sim for uncorrected cluster defining threshold of p<0.005) in the contrast that was designed for that test?
Regards
MV
On Wed, Oct 12, 2016 at 10:27 AM, Douglas N Greve <greve@nmr.mgh.harvard.edu
wrote:
try this binary
https://gate.nmr.mgh.harvard.edu/safelinks/greve/mri_fdr
On 10/07/2016 04:11 PM, neuroimage analyst wrote:
Hi,
I was wondering if there is a way to perform fdr correction using command line in freesurfer without using matlab as mri_glmfit-sim only does bonferroni ?
Thanks Regards MV
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