Nathan,
This is a known and long-standing problem with mris_volmask. The fault occurs deep within a library, VTK, of which we make use (null pointer in vtkDataArrayTemplate<T>::GetTuple). We're trying to find a fix or workaround to this really annoying problem.
The cheap workaround is to run the -cortribbon -autorecon3 stages, and likely mris_volmask will succeed.
Nick
On Mon, 2009-08-03 at 14:18 -0400, Nathan Dankner wrote:
Hello all,
I’ve recently been having issues with several scans exiting with errors after autorecon2, and they have exclusively been segmentation faults. I’m running stable version 4.2 on a machine with plenty of memory. Any ideas what the problem might be? I’ve included the recon-all.log files for two subjects who have had the problem. Thanks,
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