Thank you Zeke and Markus! ________________________________________ From: Z K [zkaufman@nmr.mgh.harvard.edu] Sent: Tuesday, April 08, 2014 10:17 PM To: freesurfer@nmr.mgh.harvard.edu Cc: Markus Gschwind; Eiran Harel Subject: Re: [Freesurfer] Mac OSX installations incomplete? What to do?
Markus,
Thanks for pointing that out. I have added those files to the ftp link.
-Zeke
On 04/04/2014 04:16 PM, Markus Gschwind wrote:
Thank you Zeke,
What about these?
/usr/local/freesurfer/bin/bet.fsl /usr/local/freesurfer/bin/flirt.fsl /usr/local/freesurfer/bin/slicetimer.fsl
They are not there neither compared to the ubuntu install.
Best, Markus
2014-04-04 19:05 GMT+02:00 Z K <zkaufman@nmr.mgh.harvard.edu mailto:zkaufman@nmr.mgh.harvard.edu>:
There are 3 missing fsl files from the OSX snow leopard installation. They can be downloaded from here: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/fsdev/zkaufman/fsl Copy them into your "$FREESURFER_HOME/bin" directory. -Zeke On 04/04/2014 12:32 PM, Markus Gschwind wrote: > Dear Freesurfers, > > As discovered here, > > http://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg35160.html > > it seams that some Mac OSX installations suffered from incomplete files. > > I just veryfied that I had downloaded the complete image and wget says yes: > > Logging in as anonymous ... Logged in! > ==> SYST ... done. ==> PWD ... done. > ==> TYPE I ... done. ==> CWD (1) /pub/dist/freesurfer/5.3.0 ... done. > ==> SIZE freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg > ... 3394499614 > File has already been retrieved. > 2014-04-04 18:24:26 (0.00 B/s) - > ‘freesurfer-Darwin-snowleopard-i686-stable-pub-v5.3.0.dmg’ saved > [3394499614] > > > So this is what I installed recently and it seems that there are some > files missing (at least some of the fsl-functions in bin). > > Doug, you said that you suspected that it could be a problem of the > installer script? > > What should we do (also Eiran) in order to complete the installation? > > Thanks for you work! > Markus > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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