That should work, but I would recommend using
recon-all -s subject -finalsurfs
you can spec a hemi if it is only the rh
doug
Gregory Dierksen wrote:
Ok, there's the problem. rh.thickness will not load as an overlay and returns the Input/Output error message.
So can I just run the command
mris_make_surfaces -noaparc -mgz -T1 brain.finalsurfs <subjid> rh
to re-generate the right hemisphere thickness file?
On Fri, 19 Feb 2010, Douglas N Greve wrote:
Sorry, it looks like it is the thickness file, not the white surface, it is having problems with. Can you load the thickness as an overlay?
Gregory Dierksen wrote:
Yes, I can view both the left and right white matter surfaces in tksurfer.
Sorry for the delay, and thanks for your help.
Greg
On Thu, 18 Feb 2010, Douglas N Greve wrote:
An Input/Output error often means that the disk is corrupted or
possibly > full. Can you read the the lh.white with something else? Eg, can you > load it with tksurfer?
doug Gregory Dierksen wrote: Hi,
> I'm trying to make a "midgray" surface by inflating the
white surface > > of a
subject by 5% using the following command:
> mris_expand -thickness rh.white 0.5 rh.midgray.05 > I am getting the following output: > using distance as a & of thickness
expanding surface rh.white by 0.50% of thickness and writing
it to
rh.midgray.05 reading thickness... freadFloat: fread failed Input/Output error freadFloat: fread failed Input/Output error freadFloat: fread failed Input/Output error ...
> You get the idea. Usually this command takes about 20
minutes or so > > to
expand a surface... when this message comes up (continuous)
I've let > > it
run for a couple hours without completing (I haven't let it go
to its
conclusion because it takes too long).
> So, what's going? How can I fix this? > Thanks,
Greg Dierksen
> > >