7 Jul
2017
7 Jul
'17
1:03 p.m.
Can you send the full terminal output?
On 6/27/17 4:15 PM, SudEEpti wrote:
I tried the following, but the program seems to seg fault. No output files are created. Please let me know what you think I might be missing. Thank you!
mri_gtmpvc --i pet.nii.gz --seg gtmseg.mgz --reg reg.lta --o $PWD/s1
--no-reduce-fov /mri_gtmpvc done /
mri_gtmpvc --i pet.nii.gz --seg $PWD/s1/aux/seg.nii.gz --regheader
--o $PWD/s2 --rbv /Segmentation fault (core dumped)/
On Mon, Dec 5, 2016 at 5:21 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:
It is not set up to do it this way, but there is a work-around. Run mri_gtmpvc without --rbv but with --no-reduce-fov, then run it again specifying the gtmpvcoutput/seg/seg.nii.gz file as the segmentation and --regheader instead of --reg. On 12/05/2016 11:52 AM, SudEEpti wrote: > Hello, > > Is there a way to save the PVC (RBV) output in native PET resolution, > before upsampling? > > Would you also be able to share the command that is used for > upsampling? I would like to play with a different type of interpolation. > > Thank you very much. > > Su > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> -- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu <mailto:greve@nmr.mgh.harvard.edu> Phone Number: 617-724-2358 <tel:617-724-2358> Fax: 617-726-7422 <tel:617-726-7422> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 <https://gate.nmr.mgh.harvard.edu/filedrop2> www.nmr.mgh.harvard.edu/facility/filedrop/index.html <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu <mailto:Freesurfer@nmr.mgh.harvard.edu> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline <http://www.partners.org/complianceline> . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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