Re: [Freesurfer] Failure to use yeo-7/17 networks maps as templates in MRIcron

Hi Hsiang-Yuan,

That's because the header information is different. You can do the following:

...

mri_vol2vol --mov Yeo2011Parcellation.nii.gz --targ FSL_MNI2mm_template.nii.gz --regheader --nearest --o Yeo2011_FSL2mm.nii.gz

The output file "Yeo2011_FSL2mm.nii.gz" should have an orientation compatible with mricron. Can you let me know if this works.

Thanks, Thomas

On Mon, Jul 4, 2016 at 12:58 AM, Hsiang-Yuan Lin louislin28@gmail.com wrote:

Hi Prof. Yeo,

I have problems utilizing yeo 7/17 cortical network parcellation maps as templates in MRIcron (I aim to use your cortical parcellation maps to underlay my findings in order to derive the implications based on iFC networks). To be specific, there is an orientation problem in the current version of parcellation maps in MNI space.

Thank you for your help in advance.

Best, Hsiang-Yuan

-- Hsiang-Yuan Lin, M.D. Attending Psychiatrist & Adjunct Lecturer Department of Psychiatry & Child Mental Health Center National Taiwan University Hospital and College of Medicine email: louislin28@gmail.com CV: https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharin... https://www.researchgate.net/profile/Hsiang_Yuan_Lin2

-- Hsiang-Yuan Lin, M.D. Attending Psychiatrist & Adjunct Lecturer Department of Psychiatry & Child Mental Health Center National Taiwan University Hospital and College of Medicine email: louislin28@gmail.com CV: https://drive.google.com/file/d/0B3jQGSXih2aeY2o1QnJwUVJjU1U/view?usp=sharin... https://www.researchgate.net/profile/Hsiang_Yuan_Lin2