Hi Daniel
do you have a mixed version of binaries? This works fine for me: /usr/local/freesurfer/stable6_0_0/bin/mri_relabel_hypointensities -all-info ProgramName: mri_relabel_hypointensities ProgramArguments: -all-info ProgramVersion: $Name: stable6 $ TimeStamp: 2019/02/19-16:01:28-GMT BuildTimeStamp: Jan 18 2017 16:38:58 CVS: $Id: mri_relabel_hypointensities.c,v 1.13 2015/05/15 18:44:10 nicks Exp $ User: fischl Machine: tiamat.nmr.mgh.harvard.edu Platform: Linux PlatformVersion: 3.10.0-957.1.3.el7.x86_64 CompilerName: GCC CompilerVersion: 40400
maybe you need a new version of mri_relabel_hypointensities?
cheers Bruce On Tue, 19 Feb 2019, Drucker, Daniel wrote:
freesurfer-6.0.1/bin/recon-all line 630 calls:
mri_relabel_hypointensities -all-info
However, -all-info is not a valid option:
$ mri_relabel_hypointensities usage: mri_relabel_hypointensities [options] <input aseg> <surface directory> <output aseg>
This program measures a variety of anatomical properties
valid options are:
-l <label file> - limit calculations to specified label -a <annotation file> - compute properties for each label in the annotation file separately
$ mri_relabel_hypointensities -all-info unknown option -all-info
--
Daniel M. Drucker, Ph.D.
Director of IT, McLean Imaging Center