Dear FreeSurfer Experts,
I compared 2 groups in QDEC in spc (from pre to post) and found a cluster that survives Monte Carlo correction. Now I would like to extract the data for each participant and each time point from that cluster so that I can plot the change.
How could I do this? I tried this so far: aparcstats2table --qdec-long $SUBJECTS DIR/qdec/2016.12.06-40kids-long.qdec.table2-1.dat --hemi rh - -tablefile $SUBJECTS DIR/qdec/2016.12.08-40kids-2stagemodel/rharea-cluster-extracted.txt --parc $SUBJECTS DIR/qdec/2016.12.08-40kids-2stagemodel/rh-area again/rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh
But I get this error: ERROR: The stats file /nobackup/etsch2/kids/prepost-61kids/AL3K_1.long.AL3K.base/stats/rh./nobackup/etsch2/kids/prepost-61kids//qdec/2016.12.08-40kids-2stagemodel/rh-area_again/rh-Diff-1-3-Intercept-long.area-spc/cache.th30.abs.sig.cluster.mgh.stats is not found or is too small to be a valid statsfile Use --skip flag to automatically skip bad stats files
Do I have to define my cluster as a ROI and then warp it onto the single time points? How would I do that?
Any help is much appreciated! Thank you
Clara