You can try loading your volume as both the targ and mov, rotating it to where you want, saving the registration, then using mri_vol2vol to apply the transformation. See if that works.
doug
Rosa Lafer-Sousa wrote:
Hi,
I need to manually rotate and reslice an anatomical volume. I am pretty sure this can be done using tkregister (or tkregister2?), but the documentation is limited. If tkregister is the way to go, what is the command line I need to enter pull up my volume (e.g raw_rawavg.mgz) in the GUI? If tkregister is not the way to go, what is?
thanks! Rosa
Rosa Lafer-Sousa Lab Manager, Bevil Conway Wellesley College - Neuroscience 106 Central Street Wellesley, MA
210-325-3185 rlaferso@wellesley.edu mailto:rlaferso@wellesley.edu
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