Hi Doug,
Attached both bbregister.log and reg_feat2anat.log.
Thanks for help! Xi-Nian
On Mon, Dec 14, 2009 at 9:44 AM, Douglas N Greve greve@nmr.mgh.harvard.eduwrote:
Can you send the reg-feat2anat log file?
doug
Xinian Zuo wrote:
Hi FSers,
I am new to freesurfer. now start to use it for looking at struc-func relationship. Normally, in fsl, I employ bet for both example_func and highresh anat. it means that the func_brain and anat_brain are fed into flirt to estimate the co-registration. here, i try to use reg_feat2anat to do this. but in this new version (4.5), it told me the betfunc command can not be found. thus I just used the version without --bet. the results in tksurfer looked not good. I am guessing it was caused by the highres with large neck areas. MY QUESTION is how can I trigger reg_feat2anat (or whatever other commands) to take skull-stripped highres for the co-registration (in fact, the brainmask.mgz already there)? Or I was wrong, reg_feat2anat did this consideration? Any suggestions would be appreciated! -- Xinian Zuo, Ph.D Associate Research Scientist Institute for Pediatric Neuroscience NYU Child Study Center 215 Lexington Ave., 14th Floor New York, NY 10016 Phone: 212-263-4735 Public: www.AboutOurKids.org http://www.AboutOurKids.org
Academic: http://publicationslist.org/xinian.zuo Personal: zuoxinian.googlepages.com http://zuoxinian.googlepages.com
Blog: http://restbrain.blogspot.com
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