Re: [Freesurfer] segmentation help

Hi Dilip

you should go through our online tutorials. They explain all of this in detail.

cheers Bruce On Mon, 10 Apr 2017, Dilip Puri wrote:

Hi,

To-do "recon-all" where should I keep all the files. I mean in which directory. What are the command lines?

Hope for response.

Thanks Dilip

On Sun, Apr 9, 2017 at 7:18 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi Dilip

  you need to run your image through recon-all.

  cheers
  Bruce

  On Sun, 9 Apr 2017, Dilip Puri
  wrote:

  > Hi all,
  >
  > I've 200 analyze7.5 format images(OASIS Dataset) and I want to
  segment
  > HippoCampus.
  >
  > My input file xyz.img and output file will be like xyz_seg.img
  which
  > contains only hippocampus image it like Grond Truth image for
  my original
  > input image.
  >
  > Here is sample files including original and segmented mask
  link.
  >
  > Even I am very new to FREESURFER so I don't know the procedure
  to
  > reconstruct the images.
  >
  >
  > Kindly help me.
  >
  >

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