Following up on Ashley's post from 06 Jun 2011 (see below), I also find certain commands (see below) are not installed with the current (v5.1) PPC OS X Tiger distribution. I had to go back to v4.3 to get a complete set of commands.
cheers Iain
talairach_avi: Command not found. mri_watershed: Command not found. mri_segment: Command not found. mri_tessellate: Command not found. mri_concatenate_lta: Command not found. mri_normalize_tp2: Command not found. mris_smooth: Command not found. mris_inflate: Command not found. mris_curvature: Command not found. mris_sphere: Command not found. mris_fix_topology: Command not found. mris_topo_fixer: Command not found. mris_ca_label: Command not found. mris_euler_number: Command not found. mris_make_surfaces: Command not found. mris_register: Command not found. mris_volmask: Command not found. mris_anatomical_stats: Command not found. mrisp_paint: Command not found. mris_curvature_stats: Command not found. mris_calc: Command not found. mri_robust_register: Command not found. mri_robust_template: Command not found. mri_segstats: Command not found.
Commands missing in freesurfer directory ANN40 Mon, 06 Jun 2011 06:22:06 -0700
Hi all,
I recently downloaded and installed freesurfer for a Mac PowerPC. I tried running recon-all on my data and an error message came up saying command not found for talairach_avi and many other commands. I looked in my /Applications/freesurfer/bin directory and that file wasn't there. All the commands that had worked such as mri_convert were. Does anyone know what could be causing this problem?
Thanks, Ashley