Hi Bruce, it seems I have uploaded the dir as well. Thanks for your help! Regards Antonio
----Messaggio originale---- Da: crailo@inwind.it Data: 25/10/2013 17.02 A: fischl@nmr.mgh.harvard.edu Cc: freesurfer@nmr.mgh.harvard.edu Ogg: [Freesurfer] R: Re: R: Re: analysis on 4-6yrs pat
Hi Bruce, I guess running from scratch is the easiest way. I tried to upload the
whole
dir but it seems I cannot have access to it. Thanks Regards Antonio
----Messaggio originale---- Da: fischl@nmr.mgh.harvard.edu Data: 25/10/2013 15.33 A: "crailo@inwind.it"crailo@inwind.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] R: Re: analysis on 4-6yrs pat
Hi Antonio
I need the whole subject directory to diagnose what happened with the FS analysis. Or I can try rerunning it from scratch here instead if you prefer Bruce On Fri, 25 Oct 2013, crailo@inwind.it wrote:
Hi Bruce, thanks for the reply. I have uploaded two images, the original one and
the
one
preprocessed via 3D slicer N3. Thanks Regards Antonio
----Messaggio originale---- Da: fischl@nmr.mgh.harvard.edu Data: 25/10/2013 14.07 A: "crailo@inwind.it"crailo@inwind.it Cc: freesurfer@nmr.mgh.harvard.edu Ogg: Re: [Freesurfer] analysis on 4-6yrs pat
Hi Antonio
it's tough to diagnose from one slice. Is the top of the head in general darker than the bottom? It looks like it, but that might also be lower myelin content. If you upload the subject we'll take a look.
cheers Bruce On Fri, 25 Oct 2013, crailo@inwind.it wrote:
Dear Freesurfer experts,
I am trying to run cortical thickness analysis on 4-6 yrs old patients
but
I
have some problem to get nice cortical gray matter. I have tried to run several N3 but with no success so I would need to ask whether you could
give
me hints to improve that. Please find attached a screenshot of what I
do
get.
Many thanks for any help.
Best Wishes
Antonio
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