Hello,
I was hoping someone may know the answer to this. I am using freesurfer version 5.1.
Using this command unpacksdcmdir -src DICOMS/"$1"_dicom -targ $1 -fsfast -scanonly $1/scan_"$1".txt
where scan_name.txt lists the scan names used in the protocol and $1 is the subject's ID. I keep getting this error for my diffusion images: --------------------------------------------------------- Run 9 ----------------------------------------- Thu Dec 15 08:23:55 EST 2011 9 ep2d_diff_mddw_20_p2-MOD MGZ 009.mgz INFO: this run has an error, but trying anyway Files In Run: --------------- 04945195 ----------------------------- ERROR: reading DICOMS/TBI_B41_dicom//04945195 tag 28 30
I have two different sets of protocols and this is only happening for subjects with this protocol- exactly the same error with the same dicom (TENSOR dicom). However, when using another protocol I do not receive this error- and I have two different sets of scan names for them respectively.
Any idea what this can be and how to fix- or if this will seriously affect processing if I just went on to manually convert the dti image?
Thanks, Danielle
Ph.D. Program in Behavioral Neuroscience Boston University School of Medicine L-815 72 E. Concord St Boston, MA 02118
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