The problem is that you have a version 4 analysis that you are trying to view with version 5 tools. To use version 5 visualization, you'll need to remake the analysis in version 5 and then reanalyze. Otherwise, you'll have to use the version 4 stream (instructions attached). It is somewhat difficult for me to support the version 4 stream because it is so old.
doug
On 12/06/2012 03:27 PM, Julia Foecker wrote:
I have the two versions 4 and 5 , but I am receiving the same error messages with 5.1 For example when I type in preproc-see there is no -surface as well. Isn't there any other possibility to solve that issue?
It may have also sth. to do with the computer. I have a new Mac, not sure if this may be the reason. As I said, I do not think this is due to the version...I just tried that and similar requirements are missing when I am doing that with 5.1
Thanks again for further advices, Julia
On 12/6/12 11:56 AM, Douglas N Greve wrote:
Julia, what version of FS are you using? It looks like pre-5.0. Can you upgrade to 5.1? There were a lot of changes in going from 4 to 5, and it is becoming increasingly hard to support version 4.
doug
On 12/06/2012 02:45 AM, Julia Foecker wrote:
thanks. attached the info file.
When I run the surf-sess command after that, it shows the functional on a surface (see attached but the values at the occip regions show "inf." (see figure 1 attached). Moreover, when I try to load the occipital patch it shows me the attached file (fig.3) and I cannot use the command -> configure -> overlay to change settings.
I have used fake ecc. runs (I have recorded only polar runs).
Would you have any further suggestions? Thanks, Julia
On Wed, 05 Dec 2012 17:03:31 -0500 Douglas N Greve greve@nmr.mgh.harvard.edu wrote
It should automatically detect that this was a retinotopy analysis and then load the polar and eccen. Was this configured as a retinotopy analysis? Can you send me the
$ANALYSIS_PHASE/analysis.info file?
doug
On 12/05/2012 04:12 PM, Julia Foecker wrote:
Hi Doug,
I tried now several ways to get the maps on the surface:
- When I am deleting -retinotopy flag and type in:
> tksurfer-sess -debug -s $SESSIONNAME -hemi lh -d $SESSIONDIRECTORY > -analysis $ANALYSIS_PHASE
I got the message:no contrast has been specified
(I do not have any contrasts in the analysis, just use polar angle maps)
- I tried to use the commands on the website you referred to, but
I do not have -surface in the preproc-sess (see attached) The other commands depend on this preproc-sess command.
- I tried the following command
paint-sess -s $SESSIONNAME -d $SESSIONDIRECTORY -analysis $ANALYSIS_PHASE
and I got the errors listed below...
I am not sure how to procede. Would you have any further suggestions? Many thanks, Julia
Thanks, Julia
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