Re: [Freesurfer] help

that freeview command is incorrect. it would need to be something like freeview -v file.nii.gz

On 04/07/2017 12:31 PM, Dilip Puri wrote:

I used command

freeview -v .

then from title bar I uploaded your.lefthippo.nii file.

On Fri, Apr 7, 2017 at 9:40 PM, Douglas N Greve <greve@nmr.mgh.harvard.edu mailto:greve@nmr.mgh.harvard.edu> wrote:

what is your freeview command? Are you trying to view it on a surface?


On 04/07/2017 12:53 AM, Dilip Puri wrote:
> Hi everyone,
>
> when I used following command:
>
> mri_binarize --i myfile.img --match 17 --binval -1 --o
> your.lefthippo.nii.gz
>
> then I got output your.lefthippo.nii.gz file when I read this file
> using FREEVIEW then it completly different from original mask.
>
>
>
> Thanks
>
> Dilip​
>
>
> On Thu, Apr 6, 2017 at 11:08 PM, Bruce Fischl
> <fischl@nmr.mgh.harvard.edu <mailto:fischl@nmr.mgh.harvard.edu>
<mailto:fischl@nmr.mgh.harvard.edu
<mailto:fischl@nmr.mgh.harvard.edu>>> wrote:
>
>     Hi Dilip
>
>     yes, freesurfer will do this for you, although the labels
will be
>     17 for
>     left hippocampus and 53 for right.
>
>     cheers
>     Bruce
>     On Thu, 6 Apr 2017, Dilip Puri wrote:
>
>     > Hi everyone,
>     >
>     > I am working on Hippocampus segmentation using Neural Networks
>     for that I need labeled images of Hippocampus corresponding to
>     original images.
>     >
>     > I am using OASIS Dataset for this. I want to generate labeled
>     images using FREESURFER. Is there any way to label each 3D
co-ordinate
>     > HippoCampus -1
>     > Otherwise - 0
>     >
>     > Here are sample files link
>     >
>     > Kindly help me!
>     >
>     >
>     > Dilip Puri
>     > IIIT Vadodara
>     >
>     >
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