Dear Freesurfer group,
We are interested in processing the Hind's V1 areas in addition to the Broadman areas. I am using a developmental verison of Freesurfer 6 from 1/18/2019 on Centos 6.
I copied the V1_average into my $SUBJECTS_DIR folder and ran the following command on one subject (JS4501) as per the instructions the site https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps?
recon-all -s JS4501/ -label_v1
However, Freesurfer provides the following error:
ASSERTION FAILED: /local_mount/space/terrier/2/terrier_nightly_build/trunk/ah221-dev/utils/mrisurf_vals.c:4113 false
ASSERTION FAILED: /local_mount/space/terrier/2/terrier_nightly_build/trunk/ah221-dev/utils/mrisurf_vals.c:4113 false /usr/local/freesurfer/bin/predict_v1.sh: line 123: 32339 Segmentation fault $cmd threshold_labelfile_at_0p8 /home/delta/Desktop/FREESURFER/BSNIP1/testing_V1/JS4501/label/rh.v1.prob.label /home/delta/Desktop/FREESURFER/BSNIP1/testing_V1/JS4501/label/rh.v1.predict.label
thresholding the label...cat: /home/delta/Desktop/FREESURFER/BSNIP1/testing_V1/JS4501/label/rh.v1.prob.label: No such file or directory done @#@FSTIME 2019:05:22:13:08:17 predict_v1.sh N 3 e 831.12 S 0.41 U 831.05 P 100% M 256512 F 0 R 316437 W 0 c 332 w 20 I 0 O 8976 L 3.12 3.00 3.13 @#@FSLOADPOST 2019:05:22:13:22:08 predict_v1.sh N 3 1.75 1.91 2.39
Started at Wed May 22 12:55:23 EDT 2019 Ended at Wed May 22 13:22:08 EDT 2019 #@#%# recon-all-run-time-hours 0.446 recon-all -s JS4501 finished without error at Wed May 22 13:22:08 EDT 2019 done
As a result, the rh.v1.predict.label & lh.v1.predict.label are generated but there are no v1.prob.labels. Is there anything I need to adjust to generate the Hind's V1 maps?
Thanks! Olivia
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