Hi Pietro,
I don't think we've setup a pipeline for that yet. You'll need to rerun the individual commands after mris_make_surfaces (including mris_thickness to regenerate the thickness maps)
cheers Bruce
On Wed, 24 Oct 2012, pietro de rossi wrote:
Hi FreeSurfer people, I'm considering editing through direct repositioning in freeview (under tools->reposition surface) for some scans.
After that, do I need to rerun everything through the whole recon-all pipeline? What would be the command line for that?
Thank you very much,
Pietro
-- Pietro De Rossi, MD
Sapienza Università di Roma, Facoltà di Medicina e Psicologia, Dipartimento NESMOS (Neuroscienze, Salute Mentale, Organi di Senso), Ospedale Sant'Andrea, Via di Grottarossa 1035-1039, 00189 Roma
NESMOS Department (Neurosciences, Mental Health and Sensory Functions), School of Medicine and Psychology, Sapienza University, Sant?Andrea Hospital, Via di Grottarossa 1035-1039, 00189 Rome, Italy
Neurobehavioral Clinical Research Section, Social and Behavioral Research Branch, National Human Genome Research Institute (NHGRI), National Institutes of Health (NIH), Bethesda, Maryland 20892, USA