I am trying to use the "generate stats data tables" feature in qdec but am getting the error message below. So based on the error message I know that the trouble subject is SZ0020 and I looked in his file and found the attached aseg.stats file, which looks okay. I reven tried rerunning the segstats using recon-all -s SZ0020TS/ -segstats. Any ideas?
asegstats2table --common-segs --meas volume --tablefile /Applications/freesurfer/subjects/qdec/stats_tables/aseg.volume.stats.dat --statsfile=aseg.stats --subjects SZ_0020 SZ_0030 SZ_0033 SZ_0045 SZ_0049 SZ_0050 SZ_0058 SZ_0067 SZ_0006 SZ_0037 SZ_0038 SZ_0040 SZ_0048 SZ_0051 SZ_0053 SZ_0054 SZ_0059 SZ_0060 SZ_0062 SZ_0065 SZ_0069 SZ_0071 SZ_0072 SUBJECTS_DIR : /Applications/freesurfer/subjects Parsing the .stats files
ERROR: The stats file /Applications/freesurfer/subjects/*SZ_0020*/stats/aseg.stats is not found or is too small to be a valid statsfile Use --skip flag to automatically skip bad stats files
Take care, Nathan Hutcheson Graduate Research Assistant 501 Sparks Center 1748 7th Ave South Birmingham, AL 35233