[Freesurfer] flag for not stripping the image

Navid Shiee

14 Dec 2010 14 Dec '10

3:38 p.m.

Hi,

I have an image with very large ventricles, which makes the stripping step of the algorithm to fail. I have the stripped version of the image and was trying to use -noskullstrip flag to just input the stripped image. But I got an error of "could not open mask volume brainmask.mgz". Would you please guide me to hove to proceed for proceesing?

Thanks,

-- Navid

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