Can you send a pointer to the data so I can have a look? Include the folder were you run tkregister-sess from as well as the $SUBJECTS_DIR
On 8/5/2019 1:33 PM, Nasiriavanaki, Zahra wrote:
Thanks for your reply.
preproc-sess -s $subj -per-run -nostc -fwhm 0 -surface fsaverage lhrh -fsd bold -init-header -d .
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
________________________________ From: freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edumailto:freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Greve, Douglas N.,Ph.D. DGREVE@mgh.harvard.edumailto:DGREVE@mgh.harvard.edu Sent: Monday, August 5, 2019 1:01:07 PM To: freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edumailto:freesurfer@nmr.mgh.harvard.edu Subject: Re: [Freesurfer] mis-registration question
what is your registration command?
On 8/2/2019 12:17 PM, Nasiriavanaki, Zahra wrote:
Dear Freesurfers
Hi
I have a subject that the registration is not done correctly in two runs (run 12 and run 15) .
The tkregister-sess values for this subject is shown below.
Subject 1 10 0.2628 Subject 1 11 0.3038 Subject 1 12 0.7639 Subject 1 13 0.3364 Subject 1 14 0.3346 Subject 1 15 0.9361 Subject 1 16 0.2584 Subject 1 17 0.2488
I attached the screen shots from tkregister2 to this email. The functional data is only collected in a slab of parietal and occipital lobe.
I appreciate if you let me know how to fix them.
Thanks
Mona
[cid:part1.1D7D76D6.30EA461F@mgh.harvard.edu][cid:part2.3980DB9D.DA94E372@mgh.harvard.edu]
Zahra (Mona) Nasiriavanaki
Postdoctoral Research Fellow
Martinos Center for Biomedical Imaging
Massachusetts General Hospital
149 13th Street, 149-2615
Charlestown, MA, USA, 02129
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