Re: [Freesurfer] Bug Reporting: recon-all -s 001 exited with ERRORS

Is this happening on all subjects or just this one? If just this one, have you looked at the images to make sure that there is nothing really wrong?

On 11/12/2017 12:56 PM, Rosalia Dacosta Aguayo wrote:

My apologizes,

I missed forgot to include the following information:

1. FreeSurfer version: freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0
2. Platform: CentOS release 6.7
3. uname -a: Linux rosalia-PORTEGE-Z930 4.4.0-98-generic #121-Ubuntu

SMP Tue Oct 10 14:24:03 UTC 2017 x86_64 x86_64 x86_64 GNU/Linux 4. Recon-all.log: see attached

2017-11-12 18:50 GMT+01:00 Rosalia Dacosta Aguayo <rdacostaa@gmail.com mailto:rdacostaa@gmail.com>:

​Hello FreeSurfer Developers,

I am attempting ​to compute autorecon1 in a subject to see how it
works recon-all in a stepwise as described in the tutorial.
Sorry if this is a very naive question but it is the first time I
am trying to run an analysis with FreeSurfer.

After running: /*r*/*/econ-all -subjid 001 -autorecon1 -i
S_001.nii.gz/
*

I have found that it crashes with the following warning:
*recon-all -s 001 exited with ERRORS at dom *
I have seen that the problem comes from orig_nu.log

Does anyone have any thoughts on how to trouble-shoot this
problem? I have attached the recon-all.log and the orig_nu.log in
case it is of any use.

Kind regards,
Rosalia

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