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Dear freesurfer experts,
We run recon-all in a specific subject and we can see in the terminal every commands until the following line: *CORRECTING DEFECT 21 (vertices=36576, convex hull=4845, v0=64547)*
When the procedure is in this line it takes a lot of time (days) and it doesn't advance. When we open the lh.inflated and [l/r]h.orig.nofix files we can see that this subject has several errors *(see attached images)* but we don't know how we can repair it to finish the initial recon-all.
Does anyone know how to solve this situation? What can we do?
We will appreciate any help. Thank you very much in advance.
Best regards,
Marina Fernández Álvarez, PhD-student.
Laboratory of Functional Neuroscience Pablo de Olavide University
