You will have to go through a few steps. 1. Sample your labels onto the surface with mri_vol2surf --mov yoursegmentation.mgz --regheader --s subject --hemi lh --interp nearest --o lh.mysegmentation.mgz 2. Convert the surface-sampled segmentation to an annotation using mris_seg2annot. Run it with --help to get examples. You will have to create your own color table, which is probably the hardest part.
On 4/24/2019 7:31 AM, Mahshid Fouladivanda wrote:
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Dear Freesurfer Experts, I have a predetermined cortical parcels in native space. I want to display them on brain surface, As shown in the last image of page bellow: https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData_freeview I have loaded *.pial files (transferred to native space ) and then volume file (contains native space parcels not output of the recon-all) using freeview but it is not desired! Now, I have some question. First, is it possible to show determined parcels (not the output of the recon-all) on brain surface using freesurfer? Second, is my procedure correct? Then, how could I display determined parcels (not the output of the recon-all) on brain surface using freesurfer?
Regards, Mahshid
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