Re: [Freesurfer] how to get aseg.mgz without transform

the aseg is provided in native space. the talairach transform is only there to provide a like to talairach space if it is needed. so all you need to do is to remove -notalairach

On 8/22/17 4:37 AM, Ritesh Mahajan wrote:

Hello Team,

I have run "recon-all -i subject.nii -s subject -all -notalairach" command, i wanted to run it with notalairach. I am getting the following error:

"No such file or directory mris_anatomical_stats: could not open atlas transform file /subject/mri/transforms/talairach.xfm"

How can i get the aseg.mgz image without transform?

Thanks, Ritesh Mahajan _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer