Re: [Freesurfer] Generating T1 + Aseg views without Tkmedit and Freeview

Hi PPJ

I think mri_extract will do the trick.

cheers Bruce On Thu, 6 Nov 2014, Pedro Paulo de Magalhães Oliveira Junior wrote:

Hi Bruce.

I believe Tksurfer, even with renderoffscreen, requires X11. I suppose I could export one slice of T1 data and the same Slice of Aseg data and make a script to superimpose both. Not sure which of the cmd line tools to use for this slice export.

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Pedro Paulo de Magalhães Oliveira Junior Netfilter & SpeedComm Telecom-- www.netfilter.com.br -- For mobile: http://itunes.apple.com/br/artist/netfilter/id365306441

On Wed, Nov 5, 2014 at 8:03 PM, Bruce Fischl fischl@nmr.mgh.harvard.edu wrote: Hi PPJ

  I'm not sure it is. Tksurfer has an offscreen rendering option :
  setenv renderoffscreen 1

  used to work, and maybe still does, but I don't think we ever
  implemented it in tkmedit, and I'm not sure about freeview.
  Ruopeng can answer that part

  On Wed, 5 Nov 2014, Pedro Paulo de Magalhães Oliveira Junior
  wrote:

        I'm sorry if this has been answered before, I have
        browsed the mailing and
        found nothing answering this.
        I need to generate three views of the T1 data
        superimposed with Aseg data
        automatically for Quality Control without using
        FreeView or Tkmedit (the
        server generating this has no X11)

        Is it possible to do it with the command line tools?

        Thanks
        ---------------------------------------------------------------------
        Pedro Paulo de Magalhães Oliveira Junior
        Netfilter & SpeedComm Telecom-- www.netfilter.com.br
        -- For
        mobile: http://itunes.apple.com/br/artist/netfilter/id365306441



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