Hello all,
I'm attempting to use mri_convert in order to match the slice size and thickness of T2 and PD images to the Freesurfer T1 images, after converting the norm.mgz and the T2/PD images to .nii.gz. For the T2 I'm using:
mri_convert ${SUBJECT}/T2/T2.nii.gz -rl ${SUBJECT}/mri/norm.nii.gz --like ${SUBJECT}/mri/norm.nii.gz ${SUBJECT}/T2/T2_like_norm.nii.gz
And having no problems. However, using the same code for the PD images I'm arriving at a bus error each time (output below). Is there any possible work around for this?
(freesurfer-Darwin-leopard-i686-stable-pub-v5.0.0)
---
bash-3.2$ mri_convert ${SUBJECT}/PD/PD.nii.gz -rl ${SUBJECT}/mri/norm.nii.gz --like ${SUBJECT}/mri/norm.nii.gz ${SUBJECT}/PD/PD_like_norm.nii.gz
mri_convert 003_S_0907_M00/PD/PD.nii.gz -rl 003_S_0907_M00/mri/norm.nii.gz --like 003_S_0907_M00/mri/norm.nii.gz 003_S_0907_M00/PD/PD_like_norm.nii.gz
$Id: mri_convert.c,v 1.166.2.2 2010/08/10 19:11:50 greve Exp $
reading from 003_S_0907_M00/PD/PD.nii.gz...
TR=3000.00, TE=0.00, TI=0.00, flip angle=0.00
i_ras = (-1, 2.05103e-10, 0)
j_ras = (-2.05103e-10, -1, 0)
k_ras = (-0, -0, 1)
reading template info from volume 003_S_0907_M00/mri/norm.nii.gz...
INFO: transform src into the like-volume: 003_S_0907_M00/mri/norm.nii.gz
Bus error