Free Surfer Support,
I have been using the command line version for group analysis since my data set has too many factors for QDEC.
There are a few things that I enjoy about QDEC that I wish I could incorporate into the command line.
1) In QDEC the cluster color is not set arbitrarily, but rather based on significance.
Is there any way to have the cluster color be set based on significance at command line?
Is there a way to restrict the available colors that the clusters can be set as? Occasionally, cluster colors are a very similar color to the inflated underlay making it difficult to determine the outline of said cluster.
2) In QDEC one is able to visualize a scatter plot for a particular cluster. Is there any way to do this via the command line option?
Thank you,
-Tim Hendrickson