Hi,
This task will be a bit easy using fslmaths
- convert mgz file to nii using mri_convert -then use fslmaths <labeled nii file> -thr <label> -uthr <label> <outputfile.nii>
example: fslmaths wmparc.nii -thr 1006 -uthr 1006 lh_entorhinal.nii
On Thu, May 12, 2016 at 9:12 AM Douglas N Greve greve@nmr.mgh.harvard.edu wrote:
What version of FS are you using? You may need a newer version of mri_aparc2aseg. Try this one
ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mri_aparc2aseg
On 05/12/2016 06:53 AM, Caroline Beelen wrote:
If we changed the command –-ribbon to –- no ribbon, the script ran, but when we looked at the stats-file, only cortical grey matte
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
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