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Just a short note regarding these errors:
Le lun. 24 juin 2019 à 16:50, Loïc Daumail loic.daumail@gmail.com a écrit :
However, using mri_convert, I still get the same message with tclsh. " mri_convert lh.thickness template.mgh /usr/share/modules/init/bash: line 36: /usr/bin/tclsh: No such file or directory /usr/share/modules/init/bash: line 58: export: _moduleraw: not a function /usr/share/modules/init/bash: line 60: export: module: not a function mri_convert.bin lh.thickness template.mgh
[...]
If I had to guess I would say you are trying to run this on some HPC system that is using environment-modules (http://modules.sourceforge.net/) to make different software versions available to its users.
I have no idea whether these are just warnings and whether they affect the FreeSurfer output or not (it seems they don't), but maybe you should still ask the administrators of the cluster about them.
It could be that all you have to do to get rid of them is something like
module load tcsh
to get rid of them, but that's just guessing. Better ask the admins.
Best,
Tim
-- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany