Hi all,
I'm running into a problem with log output for mris_anatomical_stats. The console output seems fine, but log files are blank.
The command:
($SUBJECTS_DIR = /space/colossus/7/users/MSpect)
mris_anatomical_stats -t lh.thickness \ -label lh.cortex.label \ -nsmooth 15 \ -log ${SUBJECTS_DIR}/001_MEF_A/stats/lh.anat_stats.15.log \ 001_MEF_A lh
The output:
outputting results to /space/colossus/7/users/MSpect/001_MEF_A/stats/lh.anat_stats.15.log... reading volume /space/colossus/7/users/MSpect/001_MEF_A/mri/wm.mgz... reading input surface /space/colossus/7/users/MSpect/001_MEF_A/surf/lh.white... reading input pial surface /space/colossus/7/users/MSpect/001_MEF_A/surf/lh.pial... reading input white surface /space/colossus/7/users/MSpect/001_MEF_A/surf/lh.white... Smooth thickness map with 15 iterations on surface Smoothing done, nsteps = 15, tsec = 0.762 structure is "lh.cortex.label" number of vertices = 150813 total surface area = 99113 mm^2 total gray matter volume = 253515 mm^3 average cortical thickness = 2.333 mm +- 0.514 mm average integrated rectified mean curvature = 0.138 average integrated rectified Gaussian curvature = 0.048 folding index = 2289 intrinsic curvature index = 297.7 using thickness file rh.thickness. limiting computations to label rh.cortex.label. Smooth thickness by 15 steps before using it
The log:
[colossus:MSpect] (nmr-std-env) ls -al 001_MEF_A/stats/lh.anat_stats.15.log -rw-rw-r-- 1 jswonder bnllab 0 Oct 26 11:30 001_MEF_A/stats/lh.anat_stats.15.log
E.g., file exists, nothing in there.
bugr output:
FREESURFER_HOME: /usr/local/freesurfer/stable4
Build stamp: freesurfer-Linux-centos4_x86_64-stable-v4.0.1-20071025
RedHat release: CentOS release 4.4 (Final)
Kernel info: Linux 2.6.9-42.0.3.ELsmp x86_64
NMR Center info (/space/freesurfer exists):
machine: colossus
SUBJECTS_DIR: /space/colossus/7/users/MSpect
PWD: /space/colossus/7/users/MSpect
I could just be overlooking something simple, but I don't see what it is at present.
Thanks, Julien