Thank you Martin.
I will try this approach. I was able to temporarily move the longitudinal subject data to its own folder to run aparc2table and aseg2table. Hopefully this will also work for the hippocampal subfield script.
Best wishes,
Sal
Salil Soman, MD, MS Postdoctoral Research Fellow - Stanford Radiological Sciences Laboratory Fellow - Palo Alto War Related Illness and Injury Study Center WOC Neuroradiology Attending - Veterans Affairs Palo Alto Health Care System On Jan 7, 2014 8:07 AM, "Martin Reuter" mreuter@nmr.mgh.harvard.edu wrote:
Hi Salil,
just run the hippo-subfields on the longitudinal results like this:
recon-all -long <tpNi> <templateid> -hippo-subfields
to generate the subfield data. I am not familiar with the kvlQuantify... script and think it works on all subjects in the Subjects dir. Not sure what the best way is to solve this as your subject dir contains also the cross and base results. Probably you can run the script and it will simply skip the cross and base directories (as no -hippo-subfields was run on them).
Best, Martin
On 01/05/2014 01:40 AM, Salil Soman wrote:
Hi,
I have been able to do the longitudinal processing steps for a number of subjects with 3 time points each, and then extract the generated statistics using aparcstats2table and asegstats2table. Is it possible to perform longitudinal analysis of the hippocampal subfields? If so, could someone point me to how to perform this analysis, as kvlQuantifyHippocampalSubfieldSegmentations.sh does not work on the output files I've generated.
Thank you.
Salil Soman, MD, MS
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