Dear FreeSurfers,
I tried using FreeSurfer 5.3 with the new T2 flags and I got the following error:
INFO: Reading transformation from file /tmp/1b2003d0-08c9-4e48-9e9d-622f29f0ff44/mri/transforms/T2raw.lta... Reading transform with LTAreadEx() No such file or directory ERROR: Reading transform from file /tmp/1b2003d0-08c9-4e48-9e9d-622f29f0ff44/mri/transforms/T2raw.lta Linux pe01 3.5.0-27-generic #46~precise1-Ubuntu SMP Tue Mar 26 19:33:21 UTC 2013 x86_64 x86_64 x86_64 GNU/Linux
This is the command I used:
/usr/local/freesurfer-5.3/bin/recon-all -T2 0517a9f6-098e-47e8-9038-347d8ec7f840/PPMI_3557_MR_Axial_PD-T2_TSE__br_raw_20110406143102862_49_S103376_I226466.dcm -i 1d58a0ab-3be7-4f18-974a-7faed908c840/MR_MPRAGE_GRAPPA__br_raw_20110406143100268_1_S103377_I226467.dcm -subjid 1b2003d0-08c9-4e48-9e9d-622f29f0ff44 -all -mprage -nuintensitycor-3T -qcache -T2pial
Does anyone know why I got this error with the T2 or what I did wrong?
Many thanks!
joana