Try mri_volcluster. Pass you masked sig as the input and set --thmin 0.0001 and specify a summary file with --sum. I think that should work
On 7/31/2020 9:38 AM, Fred Sampedro wrote:
External Email - Use Caution
Dear FS experts,
I have a rather simple question:
I would like to obtain the MNI coordinates of the most significant vertex in a sig.mgh map but within a specific ROI (for instance the left supramarginal region).
Here is my attempt but with practical gaps in terms of command parameters:
mri_binarize lh aparc --min LABEL/NUMBER_OF_SUPRAMARG? --o roimask.mgh
fslmaths sig.mgh mult roimask.mgh -o maskedsig.mgh
which command could I use to obtain the MNI coordinates of the peak
value in maskedsig.mgh?
Thanks a lot in advance!
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer