8 Apr
2010
8 Apr
'10
10:19 a.m.
Krishna, How have you processed this data? Have you used any of the suggested flags and/or parameters for monkeys?
See: https://surfer.nmr.mgh.harvard.edu/fswiki/MonkeyData
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On Wed, 7 Apr 2010, Srihasam, Krishna wrote:
> Hi,
>
> I have a (0.35 mm)^3 resolution monkey brain which I am trying to segment. I am unable to get the frontal cortex to segment properly. My WM.mgz looks good ( I think), but after I do "recon-all -autorecon2-wm ", the surf that gets created has no frontal cortex. I have attached two pictures of one slice, with generated surface overlaid on WM.mgz ( WM_Surf133.jpg) and the same generated surface on T1 image (NU-Surf133.jpg). I tried adding control points, I manually edited the WM.mgz and nothing works. Any help will be appreciated..
>
>
> regards,
> Krishna Srihasam
> Postdoctoral Fellow
> Livingstone Lab
> 220 Longwood Avenue, WAS 232
> Boston, MA 02115
>
>