3 Apr
2017
3 Apr
'17
10:36 a.m.
Hi all,
my colleague Vincent wanted to register a volume in MNI305 to MNI152, unfortunately the final image appears flipped up-down and anterior-posterior when using the --mni152reg flag with mri_vol2vol. For example, trying to resample fsaverage orig.mgz to MNI152 using
mri_vol2vol --mov $SUBJECTS_DIR/fsaverage/mri/orig.mgz --mni152reg --o fsaverage.orig.MNI152.nii.gz
ends up yielding the attached image (red is the output file and background is FSL MNI152 template). Anything obvious he's doing wrong?
Cheers,
Melanie
--
Melanie Ganz-Benjaminsen, MSc, Ph.D.
Neurobiology Research Unit
University of Copenhagen
Rigshospitalet
Rockefeller Center
Juliane Maries Vej 28/30, 3.
DK-2100 Copenhagen
Denmark
phone: +45 3545 6718
e-mail: Melanie.Ganz@nru.dk
web: http://melanie.clausundmelanie.de/
