Hello again,
As a new freesurfer-er, I have one more question: I have another recon-all script that failed during the skull stripping step. It says it exited with errors, but does not actually specify any "ERROR" messages or even warnings. This the last thing it runs before failing:
register_mri: find_optimal_transform find_optimal_transform: nsamples 3481, passno 0, spacing 8 GCAhistoScaleImageIntensities: could not find wm peak resetting wm mean[0]: 117 --> 126 resetting gm mean[0]: 74 --> 74 input volume #1 is the most T1-like using real data threshold=9.0 skull bounding box = (48, 56, 22) --> (201, 204, 220) using (99, 105, 121) as brain centroid... mean wm in atlas = 126, using box (80,87,97) --> (117, 123,145) to find MRI wm before smoothing, mri peak at 0 after smoothing, mri peak at 0, scaling input intensities by inf
Any ideas why this could be happening? Please help! Thank you very much, Kristina
---- Kristina Rapuano Post-Bac IRTA Laboratory of Brain and Cognition, NIMH/NIH/DHHS Building 10, Room 4C214 10 Center Drive MSC 1366 Bethesda MD 20892-1366 Phone: (301) 402-4419 E-Mail : rapuanokm@mail.nih.gov