Jennifer,
Does that file, as specified by the full pathname shown in your output, exist? What happens if you preface it with 'mri_info'? That should open the file and show some info about it. I've done that on your attachment, and it seems to show a valid file.
Nick
On Thu, 2008-10-02 at 09:00 -0700, hranilovich@ucla.edu wrote:
I've been trying to get Qdec up and running for our lab. With some information from your help archives, I've managed to get it to accept our qdec.table.dat file and open the file, however, when I try to run the "Analyze" feature in the Design tab, I get the following ouptput, then error, and have hit a wall figuring out a way around it:
Avg-Intercept-thickness ----------------------- Does the average thickness differ from zero? 1.000 1.000 0.000 0.000;
Avg-thickness-LAMYG-Cor ----------------------- Does the correlation between thickness and LAMYG differ from zero? 0.000 0.000 1.000 1.000;
Diff-1-0-Intercept-thickness ----------------------- Does the average thickness differ between 1 and 0? 1.000 -1.000 0.000 0.000;
Diff-1-0-Cor-thickness-LAMYG ----------------------- Does the thickness--LAMYG correlation differ between 1 and 0? 0.000 0.000 1.000 -1.000;
Error in Analyze: Couldn't open file /ifs/edevel/UCLA_SCAN/STRUCT_ANALYSES/JB_DAHL/SUBJECTS/FREESURFER_OUTPUTS/6002/surf/lh.thickness.fwhm10.fsaverage.mg
I have attached the file in question. Is there something wrong with my qcache output? Opening it is not a permissions issue...
Interestingly, I had the same problem when trying to run through the Qdec tutorial in the Variations on Design exercise, but only when I tried to choose my own Smoothing and Measure Morphometric attributes.
Any suggestions are appreciated!
Thanks,
Jennifer Hranilovich
Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer