6 Oct
2018
6 Oct
'18
11:36 a.m.
External Email - Use Caution
Hello Freesurfer Community,
I am looking for a way to extract thickness values at the level of each vertex from Freesurfer atlas-based parcellated regions (aparc.annot), or more generally lobes. Is this possible?
Using mri_segstats I know it is possible to get more general metrics such as min, max and average thickness values, and # of voxels. Is it possible to use an annot file to read out the raw thickness values?
This post was the closest I could find to answering my question, however, this was at the group level and not specified for parcellated regions. https://mail.nmr.mgh.harvard.edu/pipermail//freesurfer/2012-January/022097.h...
Thank you in advance,
Lindsay
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*Lindsay Hanford, PhD*
*The Buckner Laboratory* *|* *Harvard University*