Hi,
I have a problem about tksurfer command. After installing the freesurfer step by step according to instruction, I followed the tutorial to do some tests. However, when I tried to use “tksurfer good_output lh inflated” command on the webpage https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/OutputData, the result is not the image on the page, the image I got is attached to this email. At the same time, The tkmedit works fine.
I have downloaded the tutorial data. Is there any other demo data should be downloaded? Anyone help will be greatly appreciated.
Thanks,
Ran ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ The error message is as follows.
surfer: current subjects dir: /home/sci/rantao/myinstalls/freesurfer/subjects/buckner_data/tutorial_subjs surfer: not in "scripts" dir ==> using cwd for session root surfer: session root data dir ($session) set to: surfer: /home/sci/rantao Talairach transform /autofs/space/birn_045/users/BWH/buckner_data/group_study/103/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /home/sci/rantao/myinstalls/freesurfer/subjects/buckner_data/tutorial_subjs/good_output/mri/transforms/talairach.xfm surfer: Reading header info from /home/sci/rantao/myinstalls/freesurfer/subjects/buckner_data/tutorial_subjs/good_output/mri/T1.mgz surfer: vertices=125352, faces=250700 Talairach transform /autofs/space/birn_045/users/BWH/buckner_data/group_study/103/mri/transforms/talairach.xfm does not exist ... Loading tal xfm file /home/sci/rantao/myinstalls/freesurfer/subjects/buckner_data/tutorial_subjs/good_output/surf/../mri/transforms/talairach.xfm
