14 Mar
2019
14 Mar
'19
1:51 p.m.
It looks like the library is not set up properly. Does freesurfer work outside of matlab?
On 3/14/19 1:46 PM, Miguel Ángel Rivas Fernández wrote:
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Dear Freesurfer devs,
Have you had occasion to review this error?. Could it be due to the gcc version?
Thank you very much for your help.
Best regards,
El mié., 13 mar. 2019 a las 16:09, Miguel Ángel Rivas Fernández (<miguelrivasfdez@gmail.com mailto:miguelrivasfdez@gmail.com>) escribió:
Dear Freesurfer experts, I am trying to run Freesurfer commands (eg. mri_ca_label) using Matlab in a Mac computer (macOS High Sierra 10.13.6 version) and I'm receiving the following error that I suspect are due to library incompatibilities: dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib mris_ca_label -aseg /Applications/freesurfer/subjects/10018/mri/aseg.mgz -seed 1234 10018 lh /Applications/freesurfer/subjects/10018/surf/lh.sphere.reg /Applications/freesurfer/average/lh.curvature.buckner40.filled.desikan_killiany.2010-03-25.gcs /Applications/freesurfer/subjects/10018/label/lh.aparc.annot: Aborted ans = 134 I realized that this error has been previously reported <https://mail.nmr.mgh.harvard.edu/pipermail/freesurfer/2017-November/054961.html> and, as Andrew said, one of the possible solutions could be to disable the SIP (System Protection Integrity). I have disabled the SIP following the instructions indicated here <http://osxdaily.com/2015/10/05/disable-rootless-system-integrity-protection-mac-os-x/> but unfortunately Matlab continues giving the same error. How could I solve this problem?. Any help would be appreciated. Thanks in advance. Best, -- *Miguel Ángel Rivas Fernández*-- *Miguel Ángel Rivas Fernández*
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