Hi,
I got the following error when trying to run recon-all on an MP-RAGE T1-weighted image:
Fri Apr 10 16:25:01 EDT 2009 talairach_avi done \n cp transforms/talairach.auto.xfm transforms/talairach.xfm \n #-------------------------------------------- #@# Talairach Failure Detection Fri Apr 10 16:25:02 EDT 2009 /usr/local/freesurfer/subjects/MPRAGE/mri \n talairach_afd -T 0.005 -xfm transforms/talairach.xfm \n ERROR: talairach_afd: Talairach Transform: transforms/talairach.xfm ***FAILED*** (p=0.0000, pval=0.0000 < threshold=0.0050) Darwin The-Ohio-State-University-Server.local 9.6.0 Darwin Kernel Version 9.6.0: Mon Nov 24 17:37:00 PST 2008; root:xnu-1228.9.59~1/RELEASE_I386 i386
And this was the command I typed:
recon-all -subject MPRAGE -i fmprage.nii -all
auto-recon works for other T1's using a FLASH sequence, for example, but failed on this one. Any help would be greatly appreciated.
Thank you!
-Andrew