Hello Emad,
Thank you for reporting this. Its a bug specific to the latest version of OS X (El Capitan). I have committed the fix and it will available after the nightly build. You can download via this link:
ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/dev/
Sorry for the inconvenience and thanks for reporting.
-Zeke
Hi,
I ran recon-all on the dicoms of a subject, obtained at Bay 4, and I received the following error:
mris_calc -o lh.area.mid lh.area add lh.area.pial dyld: lazy symbol binding failed: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
dyld: Symbol not found: ___emutls_get_address Referenced from: /Applications/freesurfer/bin/../lib/gcc/lib/libgomp.1.dylib Expected in: /usr/lib/libSystem.B.dylib
Trace/BPT trap Wed Dec 23 21:59:54 EST 2015 ERROR: vertexvol mris_calc -o lh.area.mid lh.area add lh.area.pial Darwin MGH000844.local 15.2.0 Darwin Kernel Version 15.2.0: Fri Nov 13 19:56:56 PST 2015; root:xnu-3248.20.55~2/RELEASE_X86_64 x86_64
recon-all -s 3Lt_002 exited with ERRORS at Wed Dec 23 21:59:54 EST 2015
For more details, see the log file /Users/Emad/Projects/3LT/subjDir/3Lt_002/scripts/recon-all.log To report a problem, see http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
I have attached the log file. Iâd truly appreciate your help.
Thank you, and with best wishes for a wonderful holiday season for everyone, Emad
Emad Ahmadi, MD
Research Fellow in Radiology Massachusetts General Hospital Harvard Medical School
25 New Chardon Street, Suite 400 Boston, MA 02114 Tel: 617 726 5237 Email: emad@nmr.mgh.harvard.edu
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