Re: [Freesurfer] Measuring regional cortical thickness

Hi Jeff,

yes, you can manually edit in tksurfer using the "custom fill" tool. And to get statistics you can use mris_anatomical_status and pass it the .annot file with -a.

cheers, Bruce

On Thu, 29 Jan 2009, Jeff Sadino wrote:

Hello, I would like to measure the cortical thickness for each region. All I can find is how to do it for user-defined ROI's, but not for each auto-segmented region. Can anyone point me in the right direction?

Also, can you manually add and subtract pixels from region labels from the surface in tksurfer in a similar way that you can in tkmedit? Thank you very much. Jeff Sadino

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