Hi Bruno,
I’m not sure I fully understand the question. If you want to use freesurfer in combination with MNE, why not just install FS normally and source it while you’ve activated your conda environment?
Best Andrew
From: freesurfer-bounces@nmr.mgh.harvard.edu freesurfer-bounces@nmr.mgh.harvard.edu on behalf of Bruno Mansur brunommansur@gmail.com Date: Friday, February 26, 2021 at 9:34 PM To: freesurfer@nmr.mgh.harvard.edu freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] Installing freesurfer 6 in a preexisting conda environment
External Email - Use Caution Dear community members,
I created a conda environment for installing MNE. Now I want to install freesurfer in this same environment to use freesurfer in combination with MNE.
Does anyone have already installed and configured freesurfer in an environment and could give me some support with it?
The mailing list has no entries related to 'conda environment' and the freesurfer installation guide webpage has no instructions related to this.
I would appreciate any help,
Best regards
-- Bruno