YES! Started to work.
Thanks Doug!
use -nuisreg mcprextreg 3
On 03/19/2014 11:34 AM, shahin@nmr.mgh.harvard.edu wrote:
I used "-nuisreg mcprextreg" in mkanalysis-sess. Got this error:
Error: -nuisreg requires two arguments"
-nuisreg
On 03/19/2014 11:24 AM, shahin@nmr.mgh.harvard.edu wrote:
Does not accept "-nuis" flag. I changed my mkanalysis-sess to this:
mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 -paradigm Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 -nuis mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color -per-run
and got this error:
ERROR: Flag -nuis unrecognized.
I think it is just confused because it expects native to be per-session. One way around this is to just specify -nuis mcprextreg instead of -mcprextreg doug
On 03/19/2014 11:15 AM, shahin@nmr.mgh.harvard.edu wrote:
But this is a per-run analysis and preproc-sess is -per-run (in native space). I assumed that I have to change my mkanalysis-sess to this:
mkanalysis-sess -analysis ColorPrj_TR4_1p5mm_PR_ANOVA -fwhm 1.5 -paradigm Conds.par -native -event-related -polyfit 2 -gammafit 2.25 1.25 -mcprextreg -TR 4 -nconditions 8 -refeventdur 14 -force -fsd bold_Color -per-run
But using -mcprextreg flag generates an error. Is it a bug?
> There is not an mcextreg file there. There is mcprextreg file. I > think > you need to run preproc with -per-session to get the mcextreg file > doug > > On 03/18/2014 02:34 PM, SHAHIN NASR wrote: >> Hi, >> When I run selxavg3-sess, I face this error: >> >> ERROR: cannot find volume matching >> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >> ERROR: loading nonpar reg >> /autofs/cluster/tootell/pitcairn/1/shahin/ColorPrj/7T/Sbj/myla2/bold_Color/013/mcextreg >> ------------------------------------------ >> ERROR: fast_selxavg3() failed\n >> >> I repeated the preproc-sess from scratch and it worked fine, >> finished without any problem and I still get the same error. I >> even >> check the registration in this run and it fine. >> >> Now I am wondering why do I see this error for this subjects >> (and >> why I don't see it for the other subjects)? >> >> Regards >> -- >> Shahin Nasr >> >> PhD in Cognitive Neuroscience >> Martinos Imaging Center, MGH >> Harvard Medical School > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > greve@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > >
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/
-- Douglas N. Greve, Ph.D. MGH-NMR Center greve@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422
Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/