You have to call recon-all for each time point, eg,
recon-all -long 01_t0 01_t0t1template -all
recon-all -long 01_t1 01_t0t1template -all
On 8/11/2020 11:40 AM, Albulena Shaqiri wrote:
External Email - Use Caution
Dear all,
I am very new to freesurfer so I might be asking an obvious question and I am sorry about that. I tried to find this in the archives but did not find a solution.
I am have done the following steps successfully for images at t0 and t1 while doing the longitudinal processing but I am stuck at the 3^rd step:
/_First step: _/
recon-all -subject 01_t0 -i /subjectfiles/t0/sanlm_13.nii -all -qcache -notal-check
recon-all -subject 01_t1 -i /subjectfiles/t1/sanlm_13.nii -all -qcache -notal-check
/_Second step_//: /
recon-all -base 01_t0t1template -tp 01_t0 -tp 01_t1 -all
/_Third step (Where I have an error): _/
recon-all -long 01_t0 01_t1 01_t0t1template -all
ERROR: Flag 01_t0t1template unrecognized.
-long 01_t0 01_t1 01_t0t1template -all
Linux heds-s008 4.15.0-47-generic #50-Ubuntu SMP Wed Mar 13 10:44:52 UTC 2019 x86_64 x86_64 x86_64 GNU/Linux
Thanks in advance,
Alba
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