Whoops. Disregard the previous question. Somehow I forgot to add the subjectname file.
Sorry for cluttering up everyone's inbox, Avram
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Avram Holmes Department of Psychology Harvard University 1210 William James Hall Phone:(617) 495-0790 33 Kirkland Street Fax:(617) 495-3728 Cambridge, MA 02138, USA Email: holmes@fas.harvard.edu ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
On Tue, 15 May 2007, Avram Holmes wrote:
All,
I'm an getting an error when I attempt to run autoreg-sess
This is the command I am running...
autoreg-sess -s c07 -d . -fsd Flanker
The following is the error I get.
Logfile is /net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/log/autoreg-sess.log setenv SUBJECTS_DIR /exp/CONCON/fMRI/structural/
--- /net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/c07 ----------- _______________________________________________________ ERROR: (/net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/c07) cannot find /net/daplab1/Raid/shared/exp/CONCON/fMRI/functional/c07/subjectname ... Continuing Tue May 15 11:05:35 EDT 2007 autoreg-sess completed with ERRORS
Any ideas about what I could do to fix this?
Thanks, Avram
Avram Holmes Department of Psychology Harvard University 1210 William James Hall Phone:(617) 495-0790 33 Kirkland Street Fax:(617) 495-3728 Cambridge, MA 02138, USA Email: holmes@fas.harvard.eduOn Thu, 10 May 2007, Avram Holmes wrote:
To anyone not outside enjoying the nice weather,
I have recently completed running intergroupavg-sess
intergroupavg-sess -analysis taumax30_stc_smooth6 -contrast Rcue_v_Ncue -group1 LowTrauma -group2 HighTrauma -intergroup LowTrauma_v_HighTrauma -space tal
Only 'minsig' and 'sig' files were generated. However, no sig.bhdr files were created. I just wanted to check to see if everything is as it should be.
Also, when I run tkmedit-sess in an attempt to view the data on both the between and within group (where all the normal files were created) analyses...
tkmedit-sess -analysis taumax30_stc_smooth6 -s LowTrauma_v_HighTrauma -isxavg random -contrast Rcue_v_Ncue -space tal -d .
I recieve the following error...
tkmedit-sess logfile is /Raid/shared/exp/REfMRI/fMRI_FPPREW/functional/log/tkmedit-sess.log
setenv SUBJECTS_DIR /exp/REfMRI/fMRI_FPPREW/structural/ INFO: Found session in: ./LowTrauma_v_HighTrauma INFO: LowTrauma_v_HighTrauma is a group average INFO: Found session in: ./LowTrauma_v_HighTrauma INFO: LowTrauma_v_HighTrauma is a group average INFO: subject is talairach INFO: subject is talairach ERROR: subject talairach does not exist in data base SUBJECTS_DIR: /exp/REfMRI/fMRI_FPPREW/structural/
Do I have to take any steps to add the talairach brain to my studies 'structural' folder so that I can use tkmedit-sess or is this error related to something else.
Thanks in advance for any help you can offer, Avram
Avram Holmes Department of Psychology Harvard University 1210 William James Hall Phone:(617) 495-0790 33 Kirkland Street Fax:(617) 495-3728 Cambridge, MA 02138, USA Email: holmes@fas.harvard.edu